针对组织病理学图像数据的临床决策支持主要侧重于强烈监督的注释，这提供了直观的解释性，但受专业表现的束缚。在这里，我们提出了一种可解释的癌症复发预测网络（Ecarenet），并表明没有强注释的端到端学习提供最先进的性能，而可以通过注意机制包括可解释性。在前列腺癌生存预测的用例上，使用14,479个图像和仅复发时间作为注释，我们在验证集中达到0.78的累积动态AUC，与专家病理学家（以及在单独测试中的AUC为0.77放）。我们的模型是良好的校准，输出生存曲线以及每位患者的风险分数和群体。利用多实例学习层的注意重量，我们表明恶性斑块对预测的影响较高，从而提供了对预测的直观解释。我们的代码可在www.github.com/imsb-uke/ecarenet上获得。

In this paper we explore the task of modeling (semi) structured object sequences; in particular we focus our attention on the problem of developing a structure-aware input representation for such sequences. In such sequences, we assume that each structured object is represented by a set of key-value pairs which encode the attributes of the structured object. Given a universe of keys, a sequence of structured objects can then be viewed as an evolution of the values for each key, over time. We encode and construct a sequential representation using the values for a particular key (Temporal Value Modeling - TVM) and then self-attend over the set of key-conditioned value sequences to a create a representation of the structured object sequence (Key Aggregation - KA). We pre-train and fine-tune the two components independently and present an innovative training schedule that interleaves the training of both modules with shared attention heads. We find that this iterative two part-training results in better performance than a unified network with hierarchical encoding as well as over, other methods that use a {\em record-view} representation of the sequence \cite{de2021transformers4rec} or a simple {\em flattened} representation of the sequence. We conduct experiments using real-world data to demonstrate the advantage of interleaving TVM-KA on multiple tasks and detailed ablation studies motivating our modeling choices. We find that our approach performs better than flattening sequence objects and also allows us to operate on significantly larger sequences than existing methods.

Classically, the development of humanoid robots has been sequential and iterative. Such bottom-up design procedures rely heavily on intuition and are often biased by the designer's experience. Exploiting the non-linear coupled design space of robots is non-trivial and requires a systematic procedure for exploration. We adopt the top-down design strategy, the V-model, used in automotive and aerospace industries. Our co-design approach identifies non-intuitive designs from within the design space and obtains the maximum permissible range of the design variables as a solution space, to physically realise the obtained design. We show that by constructing the solution space, one can (1) decompose higher-level requirements onto sub-system-level requirements with tolerance, alleviating the "chicken-or-egg" problem during the design process, (2) decouple the robot's morphology from its controller, enabling greater design flexibility, (3) obtain independent sub-system level requirements, reducing the development time by parallelising the development process.

Recent advances in distributed artificial intelligence (AI) have led to tremendous breakthroughs in various communication services, from fault-tolerant factory automation to smart cities. When distributed learning is run over a set of wirelessly connected devices, random channel fluctuations and the incumbent services running on the same network impact the performance of both distributed learning and the coexisting service. In this paper, we investigate a mixed service scenario where distributed AI workflow and ultra-reliable low latency communication (URLLC) services run concurrently over a network. Consequently, we propose a risk sensitivity-based formulation for device selection to minimize the AI training delays during its convergence period while ensuring that the operational requirements of the URLLC service are met. To address this challenging coexistence problem, we transform it into a deep reinforcement learning problem and address it via a framework based on soft actor-critic algorithm. We evaluate our solution with a realistic and 3GPP-compliant simulator for factory automation use cases. Our simulation results confirm that our solution can significantly decrease the training delay of the distributed AI service while keeping the URLLC availability above its required threshold and close to the scenario where URLLC solely consumes all network resources.

The need for data privacy and security -- enforced through increasingly strict data protection regulations -- renders the use of healthcare data for machine learning difficult. In particular, the transfer of data between different hospitals is often not permissible and thus cross-site pooling of data not an option. The Personal Health Train (PHT) paradigm proposed within the GO-FAIR initiative implements an 'algorithm to the data' paradigm that ensures that distributed data can be accessed for analysis without transferring any sensitive data. We present PHT-meDIC, a productively deployed open-source implementation of the PHT concept. Containerization allows us to easily deploy even complex data analysis pipelines (e.g, genomics, image analysis) across multiple sites in a secure and scalable manner. We discuss the underlying technological concepts, security models, and governance processes. The implementation has been successfully applied to distributed analyses of large-scale data, including applications of deep neural networks to medical image data.

Because of their close relationship with humans, non-human apes (chimpanzees, bonobos, gorillas, orangutans, and gibbons, including siamangs) are of great scientific interest. The goal of understanding their complex behavior would be greatly advanced by the ability to perform video-based pose tracking. Tracking, however, requires high-quality annotated datasets of ape photographs. Here we present OpenApePose, a new public dataset of 71,868 photographs, annotated with 16 body landmarks, of six ape species in naturalistic contexts. We show that a standard deep net (HRNet-W48) trained on ape photos can reliably track out-of-sample ape photos better than networks trained on monkeys (specifically, the OpenMonkeyPose dataset) and on humans (COCO) can. This trained network can track apes almost as well as the other networks can track their respective taxa, and models trained without one of the six ape species can track the held out species better than the monkey and human models can. Ultimately, the results of our analyses highlight the importance of large specialized databases for animal tracking systems and confirm the utility of our new ape database.

In this paper we propose new probabilistic and dynamic (adaptive) strategies to create multi-method ensembles based on the Coral Reefs Optimization with Substrate Layers (CRO-SL) algorithm. The CRO-SL is an evolutionary-based ensemble approach, able to combine different search procedures within a single population. In this work we discuss two different probabilistic strategies to improve the algorithm. First, we defined the Probabilistic CRO-SL (PCRO-SL), which substitutes the substrates in the CRO-SL population by {\em tags} associated with each individual. Each tag represents a different operator which will modify the individual in the reproduction phase. In each generation of the algorithm, the tags are randomly assigned to the individuals with a similar probability, obtaining this way an ensemble with a more intense change in the application of different operators to a given individual than the original CRO-SL. The second strategy discussed in this paper is the Dynamical Probabilistic CRO-SL (DPCRO-SL), in which the probability of tag assignment is modified during the evolution of the algorithm, depending on the quality of the solutions generated in each substrate. Thus, the best substrates in the search process will be assigned with a higher probability that those which showed a worse performance during the search. We test the performance of the proposed probabilistic and dynamic ensembles in different optimization problems, including benchmark functions and a real application of wind turbines layout optimization, comparing the results obtained with that of existing algorithms in the literature.

Air pollution is a crucial issue affecting human health and livelihoods, as well as one of the barriers to economic and social growth. Forecasting air quality has become an increasingly important endeavor with significant social impacts, especially in emerging countries like China. In this paper, we present a novel Transformer architecture termed AirFormer to collectively predict nationwide air quality in China, with an unprecedented fine spatial granularity covering thousands of locations. AirFormer decouples the learning process into two stages -- 1) a bottom-up deterministic stage that contains two new types of self-attention mechanisms to efficiently learn spatio-temporal representations; 2) a top-down stochastic stage with latent variables to capture the intrinsic uncertainty of air quality data. We evaluate AirFormer with 4-year data from 1,085 stations in the Chinese Mainland. Compared to the state-of-the-art model, AirFormer reduces prediction errors by 5%~8% on 72-hour future predictions. Our source code is available at https://github.com/yoshall/airformer.

Advancements in reinforcement learning (RL) have inspired new directions in intelligent automation of network defense. However, many of these advancements have either outpaced their application to network security or have not considered the challenges associated with implementing them in the real-world. To understand these problems, this work evaluates several RL approaches implemented in the second edition of the CAGE Challenge, a public competition to build an autonomous network defender agent in a high-fidelity network simulator. Our approaches all build on the Proximal Policy Optimization (PPO) family of algorithms, and include hierarchical RL, action masking, custom training, and ensemble RL. We find that the ensemble RL technique performs strongest, outperforming our other models and taking second place in the competition. To understand applicability to real environments we evaluate each method's ability to generalize to unseen networks and against an unknown attack strategy. In unseen environments, all of our approaches perform worse, with degradation varied based on the type of environmental change. Against an unknown attacker strategy, we found that our models had reduced overall performance even though the new strategy was less efficient than the ones our models trained on. Together, these results highlight promising research directions for autonomous network defense in the real world.

Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology.